Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 ACTG1P4-201ENST00000425123 1122 ntBASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 FAM185BP-201ENST00000443595 716 ntBASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC00628-201ENST00000628516 1289 ntBASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA1Q9Y5H4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 RNA5SP421-201ENST00000516864 134 ntBASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDHGA1Q9Y5H4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDHGA1Q9Y5H4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms