Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.71■□□□□ 0.59
VCPP55072 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.71■□□□□ 0.59
VCPP55072 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.71■□□□□ 0.59
VCPP55072 RPS2P1-201ENST00000434010 821 ntBASIC18.71■□□□□ 0.59
VCPP55072 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.71■□□□□ 0.59
VCPP55072 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.71■□□□□ 0.59
VCPP55072 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
VCPP55072 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.71■□□□□ 0.59
VCPP55072 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.71■□□□□ 0.59
VCPP55072 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.71■□□□□ 0.59
VCPP55072 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VCPP55072 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.71■□□□□ 0.59
VCPP55072 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCPP55072 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.71■□□□□ 0.59
VCPP55072 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VCPP55072 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VCPP55072 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VCPP55072 RCN1P2-201ENST00000398357 915 ntBASIC18.7■□□□□ 0.58
VCPP55072 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 RBM17P3-201ENST00000417687 1192 ntBASIC18.7■□□□□ 0.58
VCPP55072 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 AC004832.2-201ENST00000426397 482 ntBASIC18.7■□□□□ 0.58
VCPP55072 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.7■□□□□ 0.58
VCPP55072 AC113404.2-201ENST00000507884 177 ntBASIC18.7■□□□□ 0.58
VCPP55072 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.7■□□□□ 0.58
VCPP55072 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.7■□□□□ 0.58
VCPP55072 AC021087.4-201ENST00000563761 564 ntBASIC18.7■□□□□ 0.58
VCPP55072 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.7■□□□□ 0.58
VCPP55072 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VCPP55072 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.7■□□□□ 0.58
VCPP55072 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VCPP55072 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.7■□□□□ 0.58
VCPP55072 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.7■□□□□ 0.58
VCPP55072 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCPP55072 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
VCPP55072 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.69■□□□□ 0.58
VCPP55072 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VCPP55072 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.69■□□□□ 0.58
VCPP55072 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VCPP55072 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.69■□□□□ 0.58
VCPP55072 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 AC211486.1-202ENST00000416371 468 ntBASIC18.69■□□□□ 0.58
VCPP55072 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VCPP55072 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.69■□□□□ 0.58
VCPP55072 AC211476.1-201ENST00000503899 468 ntBASIC18.69■□□□□ 0.58
VCPP55072 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VCPP55072 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.69■□□□□ 0.58
VCPP55072 AC012640.2-201ENST00000561606 901 ntBASIC18.69■□□□□ 0.58
VCPP55072 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
VCPP55072 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VCPP55072 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VCPP55072 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCPP55072 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms