Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.88■□□□□ 0.45
VCANP13611 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.88■□□□□ 0.45
VCANP13611 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
VCANP13611 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.87■□□□□ 0.45
VCANP13611 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VCANP13611 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VCANP13611 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 AL391825.1-201ENST00000457671 1364 ntBASIC17.87■□□□□ 0.45
VCANP13611 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.87■□□□□ 0.45
VCANP13611 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 AP005482.1-201ENST00000563722 1273 ntBASIC17.87■□□□□ 0.45
VCANP13611 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VCANP13611 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.87■□□□□ 0.45
VCANP13611 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
VCANP13611 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.87■□□□□ 0.45
VCANP13611 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 AC141586.3-201ENST00000562166 1838 ntBASIC17.87■□□□□ 0.45
VCANP13611 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCANP13611 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.87■□□□□ 0.45
VCANP13611 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.86■□□□□ 0.45
VCANP13611 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.86■□□□□ 0.45
VCANP13611 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCANP13611 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCANP13611 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
VCANP13611 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCANP13611 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCANP13611 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.86■□□□□ 0.45
VCANP13611 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.86■□□□□ 0.45
VCANP13611 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.86■□□□□ 0.45
VCANP13611 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
VCANP13611 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.86■□□□□ 0.45
VCANP13611 AL021578.1-201ENST00000613646 709 ntBASIC17.86■□□□□ 0.45
VCANP13611 SPDYE12P-201ENST00000618416 771 ntBASIC17.86■□□□□ 0.45
VCANP13611 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCANP13611 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.86■□□□□ 0.45
VCANP13611 AC093677.2-201ENST00000600169 1863 ntBASIC17.86■□□□□ 0.45
VCANP13611 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.86■□□□□ 0.45
VCANP13611 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.85■□□□□ 0.45
VCANP13611 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.85■□□□□ 0.45
VCANP13611 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.85■□□□□ 0.45
VCANP13611 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
VCANP13611 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 MIR4722-201ENST00000578292 60 ntBASIC17.85■□□□□ 0.45
VCANP13611 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.85■□□□□ 0.45
VCANP13611 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.85■□□□□ 0.45
VCANP13611 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.85■□□□□ 0.45
VCANP13611 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCANP13611 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VCANP13611 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.85■□□□□ 0.45
VCANP13611 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.84■□□□□ 0.45
VCANP13611 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.84■□□□□ 0.45
VCANP13611 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.84■□□□□ 0.45
VCANP13611 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 AC122714.2-201ENST00000502787 707 ntBASIC17.84■□□□□ 0.45
VCANP13611 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.84■□□□□ 0.45
VCANP13611 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCANP13611 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms