Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 RN7SL606P-201ENST00000472779 293 ntBASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 AC122714.2-201ENST00000502787 707 ntBASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMA1Q9UHB6 AL049757.1-201ENST00000616842 1596 ntBASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 PCDHB19P-201ENST00000570871 2371 ntBASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 AC124947.2-201ENST00000547118 1133 ntBASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMA1Q9UHB6 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 AK4P3-201ENST00000418260 669 ntBASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 KRT18P57-201ENST00000443599 1254 ntBASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 AC083849.1-201ENST00000615227 514 ntBASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 AC073912.3-201ENST00000624414 853 ntBASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 UBALD1-205ENST00000590891 2641 ntBASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
LIMA1Q9UHB6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
LIMA1Q9UHB6 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIMA1Q9UHB6 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.08■□□□□ 0.65
LIMA1Q9UHB6 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.08■□□□□ 0.65
LIMA1Q9UHB6 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMA1Q9UHB6 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
LIMA1Q9UHB6 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMA1Q9UHB6 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 AL138831.2-201ENST00000606564 490 ntBASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
LIMA1Q9UHB6 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms