Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CIITAP33076 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.67■□□□□ 0.74
CIITAP33076 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CIITAP33076 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CIITAP33076 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CIITAP33076 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.66■□□□□ 0.74
CIITAP33076 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.66■□□□□ 0.74
CIITAP33076 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.66■□□□□ 0.74
CIITAP33076 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.66■□□□□ 0.74
CIITAP33076 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.66■□□□□ 0.74
CIITAP33076 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.66■□□□□ 0.74
CIITAP33076 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
CIITAP33076 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.66■□□□□ 0.74
CIITAP33076 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.66■□□□□ 0.74
CIITAP33076 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.66■□□□□ 0.74
CIITAP33076 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 AC016396.2-201ENST00000562575 1417 ntBASIC19.66■□□□□ 0.74
CIITAP33076 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CIITAP33076 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CIITAP33076 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CIITAP33076 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.65■□□□□ 0.74
CIITAP33076 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.65■□□□□ 0.74
CIITAP33076 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.65■□□□□ 0.74
CIITAP33076 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.65■□□□□ 0.74
CIITAP33076 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 AC093909.1-201ENST00000504731 1122 ntBASIC19.65■□□□□ 0.74
CIITAP33076 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.65■□□□□ 0.74
CIITAP33076 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.65■□□□□ 0.74
CIITAP33076 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
CIITAP33076 BX640515.1-201ENST00000617215 977 ntBASIC19.65■□□□□ 0.74
CIITAP33076 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
CIITAP33076 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.65■□□□□ 0.74
CIITAP33076 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.65■□□□□ 0.74
CIITAP33076 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CIITAP33076 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.64■□□□□ 0.74
CIITAP33076 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CIITAP33076 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CIITAP33076 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.64■□□□□ 0.74
CIITAP33076 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CIITAP33076 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CIITAP33076 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CIITAP33076 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.64■□□□□ 0.73
CIITAP33076 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.64■□□□□ 0.73
CIITAP33076 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.64■□□□□ 0.73
CIITAP33076 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.64■□□□□ 0.73
CIITAP33076 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CIITAP33076 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.64■□□□□ 0.73
CIITAP33076 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.64■□□□□ 0.73
CIITAP33076 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 AP002414.3-201ENST00000589352 1468 ntBASIC19.64■□□□□ 0.73
CIITAP33076 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.64■□□□□ 0.73
CIITAP33076 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CIITAP33076 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CIITAP33076 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CIITAP33076 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.63■□□□□ 0.73
CIITAP33076 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 AC006504.4-201ENST00000592118 1568 ntBASIC19.63■□□□□ 0.73
CIITAP33076 GPR89P-201ENST00000407924 1495 ntBASIC19.63■□□□□ 0.73
CIITAP33076 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.63■□□□□ 0.73
CIITAP33076 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CIITAP33076 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms