Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL11A1P12107 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL11A1P12107 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.68■□□□□ 0.74
COL11A1P12107 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.68■□□□□ 0.74
COL11A1P12107 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL11A1P12107 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.68■□□□□ 0.74
COL11A1P12107 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.68■□□□□ 0.74
COL11A1P12107 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.68■□□□□ 0.74
COL11A1P12107 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL11A1P12107 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.68■□□□□ 0.74
COL11A1P12107 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 ACTG1P14-201ENST00000446382 1122 ntBASIC19.68■□□□□ 0.74
COL11A1P12107 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL11A1P12107 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.68■□□□□ 0.74
COL11A1P12107 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.68■□□□□ 0.74
COL11A1P12107 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.68■□□□□ 0.74
COL11A1P12107 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.68■□□□□ 0.74
COL11A1P12107 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
COL11A1P12107 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.68■□□□□ 0.74
COL11A1P12107 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL11A1P12107 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.68■□□□□ 0.74
COL11A1P12107 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 KRT8P48-201ENST00000515599 1220 ntBASIC19.67■□□□□ 0.74
COL11A1P12107 AC112191.1-201ENST00000523689 701 ntBASIC19.67■□□□□ 0.74
COL11A1P12107 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.67■□□□□ 0.74
COL11A1P12107 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.67■□□□□ 0.74
COL11A1P12107 REXO1L3P-201ENST00000622202 1288 ntBASIC19.67■□□□□ 0.74
COL11A1P12107 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.67■□□□□ 0.74
COL11A1P12107 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.67■□□□□ 0.74
COL11A1P12107 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.67■□□□□ 0.74
COL11A1P12107 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL11A1P12107 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL11A1P12107 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.66■□□□□ 0.74
COL11A1P12107 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
COL11A1P12107 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.66■□□□□ 0.74
COL11A1P12107 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL11A1P12107 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.66■□□□□ 0.74
COL11A1P12107 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.66■□□□□ 0.74
COL11A1P12107 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.66■□□□□ 0.74
COL11A1P12107 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 AC135050.7-201ENST00000624508 2218 ntBASIC19.66■□□□□ 0.74
COL11A1P12107 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL11A1P12107 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL11A1P12107 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL11A1P12107 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL11A1P12107 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL11A1P12107 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.65■□□□□ 0.74
COL11A1P12107 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
COL11A1P12107 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL11A1P12107 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL11A1P12107 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
COL11A1P12107 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL11A1P12107 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL11A1P12107 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL11A1P12107 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.65■□□□□ 0.74
COL11A1P12107 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL11A1P12107 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.65■□□□□ 0.74
COL11A1P12107 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.65■□□□□ 0.74
COL11A1P12107 AC005498.2-205ENST00000593218 784 ntBASIC19.65■□□□□ 0.74
COL11A1P12107 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL11A1P12107 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL11A1P12107 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.65■□□□□ 0.74
COL11A1P12107 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL11A1P12107 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms