Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 FAM207CP-201ENST00000443486 507 ntBASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 DAD1-205ENST00000543337 501 ntTSL 3 BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 OR7E47P-204ENST00000575924 449 ntBASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 LINC00628-201ENST00000628516 1289 ntBASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC33.06■■■□□ 2.88
SHROOM4Q9ULL8 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 GK-202ENST00000378941 458 ntTSL 3 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 SIGLEC30P-201ENST00000455569 941 ntBASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 AC051619.7-201ENST00000568314 623 ntBASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 MIR661-201ENST00000384842 89 ntBASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 DDT-204ENST00000404092 805 ntTSL 3 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 REXO1L3P-201ENST00000622202 1288 ntBASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
SHROOM4Q9ULL8 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 AC074386.1-202ENST00000463561 864 ntBASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 MEIS3P1-201ENST00000495167 958 ntBASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC33.04■■■□□ 2.88
SHROOM4Q9ULL8 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 AC002472.2-201ENST00000442739 958 ntBASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 TERF1P3-201ENST00000505638 1227 ntBASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
SHROOM4Q9ULL8 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM4Q9ULL8 BSG-215ENST00000618006 1329 ntTSL 2 BASIC33.02■■■□□ 2.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms