Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
UBQLN3Q9H347 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 NUS1P2-201ENST00000417358 873 ntBASIC16.25■□□□□ 0.19
UBQLN3Q9H347 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
UBQLN3Q9H347 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 AC096582.2-201ENST00000510860 516 ntBASIC16.24■□□□□ 0.19
UBQLN3Q9H347 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 AC009533.2-201ENST00000543664 586 ntBASIC16.24■□□□□ 0.19
UBQLN3Q9H347 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 AL138688.1-201ENST00000624851 1594 ntBASIC16.24■□□□□ 0.19
UBQLN3Q9H347 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.24■□□□□ 0.19
UBQLN3Q9H347 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
UBQLN3Q9H347 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
UBQLN3Q9H347 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.23■□□□□ 0.19
UBQLN3Q9H347 TP73-AS1-210ENST00000637775 1455 ntBASIC16.23■□□□□ 0.19
UBQLN3Q9H347 AC022898.2-201ENST00000616822 1312 ntBASIC16.23■□□□□ 0.19
UBQLN3Q9H347 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms