Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 AL031598.1-201ENST00000561511 1773 ntBASIC18.37■□□□□ 0.53
CHD9Q3L8U1 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 AC245100.3-201ENST00000441281 285 ntBASIC18.36■□□□□ 0.53
CHD9Q3L8U1 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 AC129492.6-201ENST00000611383 1305 ntBASIC18.36■□□□□ 0.53
CHD9Q3L8U1 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 AC073592.3-201ENST00000625118 1834 ntBASIC18.36■□□□□ 0.53
CHD9Q3L8U1 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 STK19B-204ENST00000512515 211 ntBASIC18.36■□□□□ 0.53
CHD9Q3L8U1 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 AC022144.1-201ENST00000602255 1580 ntBASIC18.36■□□□□ 0.53
CHD9Q3L8U1 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHD9Q3L8U1 RPS2P32-201ENST00000439199 892 ntBASIC18.36■□□□□ 0.53
CHD9Q3L8U1 AL513480.1-201ENST00000451731 511 ntBASIC18.36■□□□□ 0.53
CHD9Q3L8U1 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.36■□□□□ 0.53
CHD9Q3L8U1 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CHD9Q3L8U1 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 AC135776.1-201ENST00000319817 2481 ntBASIC18.34■□□□□ 0.53
CHD9Q3L8U1 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CHD9Q3L8U1 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms