Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 IFNL4P1-201ENST00000607083 540 ntBASIC16.98■□□□□ 0.31
LDLRP01130 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LDLRP01130 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.98■□□□□ 0.31
LDLRP01130 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
LDLRP01130 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LDLRP01130 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 AC093010.1-201ENST00000473625 1624 ntBASIC16.98■□□□□ 0.31
LDLRP01130 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
LDLRP01130 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.98■□□□□ 0.31
LDLRP01130 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDLRP01130 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.98■□□□□ 0.31
LDLRP01130 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.98■□□□□ 0.31
LDLRP01130 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.97■□□□□ 0.31
LDLRP01130 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.97■□□□□ 0.31
LDLRP01130 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.97■□□□□ 0.31
LDLRP01130 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
LDLRP01130 KRT8P50-201ENST00000562022 1438 ntBASIC16.97■□□□□ 0.31
LDLRP01130 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LDLRP01130 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 BX276092.5-203ENST00000456199 560 ntBASIC16.97■□□□□ 0.31
LDLRP01130 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.97■□□□□ 0.31
LDLRP01130 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.97■□□□□ 0.31
LDLRP01130 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.97■□□□□ 0.31
LDLRP01130 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.97■□□□□ 0.31
LDLRP01130 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 AC016734.2-201ENST00000624325 1377 ntBASIC16.97■□□□□ 0.31
LDLRP01130 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.97■□□□□ 0.31
LDLRP01130 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LDLRP01130 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LDLRP01130 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDLRP01130 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.96■□□□□ 0.31
LDLRP01130 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.96■□□□□ 0.31
LDLRP01130 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
LDLRP01130 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.96■□□□□ 0.31
LDLRP01130 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
LDLRP01130 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LDLRP01130 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.96■□□□□ 0.31
LDLRP01130 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
LDLRP01130 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.96■□□□□ 0.31
LDLRP01130 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.96■□□□□ 0.31
LDLRP01130 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.96■□□□□ 0.31
LDLRP01130 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.96■□□□□ 0.31
LDLRP01130 AC011498.5-201ENST00000592027 486 ntBASIC16.96■□□□□ 0.31
LDLRP01130 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 AL031008.1-201ENST00000619963 541 ntBASIC16.96■□□□□ 0.31
LDLRP01130 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.96■□□□□ 0.31
LDLRP01130 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.96■□□□□ 0.31
LDLRP01130 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.96■□□□□ 0.31
LDLRP01130 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.96■□□□□ 0.31
LDLRP01130 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.96■□□□□ 0.31
LDLRP01130 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.96■□□□□ 0.31
LDLRP01130 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDLRP01130 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LDLRP01130 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LDLRP01130 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
LDLRP01130 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDLRP01130 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LDLRP01130 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDLRP01130 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
LDLRP01130 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDLRP01130 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDLRP01130 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.95■□□□□ 0.3
LDLRP01130 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDLRP01130 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDLRP01130 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDLRP01130 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
LDLRP01130 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms