Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 UXT-AS1-201ENST00000590504 1525 ntBASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 HCG4-201ENST00000418983 998 ntBASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 INE1-201ENST00000456273 945 ntBASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 MIR6805-201ENST00000615055 62 ntBASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL17A1Q9UMD9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 ACTG1P4-201ENST00000425123 1122 ntBASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 CD7-202ENST00000578509 925 ntTSL 3 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 AC073592.8-201ENST00000624126 511 ntBASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 AC093010.1-201ENST00000473625 1624 ntBASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC26.27■■□□□ 1.8
COL17A1Q9UMD9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC26.26■■□□□ 1.8
COL17A1Q9UMD9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 MIR658-201ENST00000385210 100 ntBASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 SPDYE12P-201ENST00000618416 771 ntBASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 AL645728.2-201ENST00000641974 660 ntBASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
COL17A1Q9UMD9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 ARL16-202ENST00000570561 768 ntTSL 2 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 MIR4259-201ENST00000584466 101 ntBASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC26.25■■□□□ 1.79
COL17A1Q9UMD9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 AC009477.1-201ENST00000452936 217 ntBASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 PACS1-203ENST00000524815 628 ntTSL 4 BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL17A1Q9UMD9 AC132938.2-201ENST00000579188 680 ntBASIC26.23■■□□□ 1.79
COL17A1Q9UMD9 MIR4453-201ENST00000584019 89 ntBASIC26.23■■□□□ 1.79
COL17A1Q9UMD9 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL17A1Q9UMD9 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL17A1Q9UMD9 AL591163.1-201ENST00000641757 987 ntBASIC26.23■■□□□ 1.79
COL17A1Q9UMD9 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
COL17A1Q9UMD9 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC26.23■■□□□ 1.79
COL17A1Q9UMD9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
COL17A1Q9UMD9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms