Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 TMPOP1-202ENST00000424642 1267 ntBASIC15.35■□□□□ 0.05
NKX3-1Q99801 LIN28AP1-201ENST00000429574 405 ntBASIC15.35■□□□□ 0.05
NKX3-1Q99801 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 ATP5G1P1-201ENST00000448724 379 ntBASIC15.35■□□□□ 0.05
NKX3-1Q99801 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 EGLN1P1-201ENST00000531623 762 ntBASIC15.35■□□□□ 0.05
NKX3-1Q99801 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 KRT18P57-201ENST00000443599 1254 ntBASIC15.34■□□□□ 0.05
NKX3-1Q99801 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 RN7SL850P-201ENST00000579959 291 ntBASIC15.34■□□□□ 0.05
NKX3-1Q99801 AC012306.2-201ENST00000609350 630 ntBASIC15.34■□□□□ 0.05
NKX3-1Q99801 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
NKX3-1Q99801 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NKX3-1Q99801 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NKX3-1Q99801 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NKX3-1Q99801 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NKX3-1Q99801 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NKX3-1Q99801 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 AC005521.1-201ENST00000393351 872 ntBASIC15.33■□□□□ 0.04
NKX3-1Q99801 RCN1P1-201ENST00000400413 996 ntBASIC15.33■□□□□ 0.04
NKX3-1Q99801 AL137013.1-201ENST00000432946 1228 ntBASIC15.33■□□□□ 0.04
NKX3-1Q99801 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.33■□□□□ 0.04
NKX3-1Q99801 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NKX3-1Q99801 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms