Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 AC093520.2-201ENST00000561830 333 ntBASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 AC100803.2-201ENST00000562459 1963 ntBASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SLC44A3Q8N4M1 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 AL513480.1-201ENST00000451731 511 ntBASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 RNA5SP421-201ENST00000516864 134 ntBASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 AC112191.1-201ENST00000523689 701 ntBASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 AC069262.1-201ENST00000539058 672 ntBASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 AL590787.1-201ENST00000568856 1315 ntBASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SLC44A3Q8N4M1 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 AC190387.1-201ENST00000551683 408 ntBASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 AL096828.2-201ENST00000567259 1965 ntBASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 AL390955.2-201ENST00000603032 514 ntBASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 AC009949.1-201ENST00000623048 1830 ntBASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SLC44A3Q8N4M1 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 AC073592.3-201ENST00000625118 1834 ntBASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms