Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM4P67936 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TPM4P67936 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TPM4P67936 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TPM4P67936 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.69■□□□□ 0.74
TPM4P67936 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TPM4P67936 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.69■□□□□ 0.74
TPM4P67936 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM4P67936 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 KRT18P65-201ENST00000439811 1286 ntBASIC19.69■□□□□ 0.74
TPM4P67936 AP003071.4-201ENST00000562276 1284 ntBASIC19.69■□□□□ 0.74
TPM4P67936 AC142381.4-202ENST00000563973 229 ntBASIC19.69■□□□□ 0.74
TPM4P67936 MIR3917-201ENST00000580971 93 ntBASIC19.69■□□□□ 0.74
TPM4P67936 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TPM4P67936 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.69■□□□□ 0.74
TPM4P67936 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.69■□□□□ 0.74
TPM4P67936 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TPM4P67936 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TPM4P67936 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.69■□□□□ 0.74
TPM4P67936 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM4P67936 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM4P67936 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM4P67936 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
TPM4P67936 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.68■□□□□ 0.74
TPM4P67936 PVRIG2P-201ENST00000435460 978 ntBASIC19.68■□□□□ 0.74
TPM4P67936 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 ITM2C-210ENST00000620962 501 ntBASIC19.68■□□□□ 0.74
TPM4P67936 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
TPM4P67936 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC19.68■□□□□ 0.74
TPM4P67936 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
TPM4P67936 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.68■□□□□ 0.74
TPM4P67936 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.68■□□□□ 0.74
TPM4P67936 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM4P67936 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TPM4P67936 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM4P67936 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM4P67936 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 BX276092.7-203ENST00000637198 1536 ntBASIC19.67■□□□□ 0.74
TPM4P67936 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM4P67936 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM4P67936 AC063926.3-201ENST00000624734 5658 ntBASIC19.67■□□□□ 0.74
TPM4P67936 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM4P67936 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 RBM17P1-201ENST00000453646 1190 ntBASIC19.67■□□□□ 0.74
TPM4P67936 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.67■□□□□ 0.74
TPM4P67936 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.67■□□□□ 0.74
TPM4P67936 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM4P67936 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM4P67936 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
TPM4P67936 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TPM4P67936 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TPM4P67936 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.67■□□□□ 0.74
TPM4P67936 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM4P67936 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
TPM4P67936 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TPM4P67936 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM4P67936 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
TPM4P67936 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.66■□□□□ 0.74
TPM4P67936 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms