Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AC139887.4-201ENST00000607877 719 ntBASIC17.36■□□□□ 0.37
COL6A2P12110 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A2P12110 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A2P12110 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A2P12110 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A2P12110 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.35■□□□□ 0.37
COL6A2P12110 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.35■□□□□ 0.37
COL6A2P12110 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
COL6A2P12110 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL6A2P12110 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL6A2P12110 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
COL6A2P12110 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.35■□□□□ 0.37
COL6A2P12110 AC113347.1-201ENST00000413321 391 ntBASIC17.35■□□□□ 0.37
COL6A2P12110 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.35■□□□□ 0.37
COL6A2P12110 HOMER2P1-201ENST00000455653 964 ntBASIC17.35■□□□□ 0.37
COL6A2P12110 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.35■□□□□ 0.37
COL6A2P12110 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.35■□□□□ 0.37
COL6A2P12110 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 LINC02012-201ENST00000608206 1725 ntBASIC17.35■□□□□ 0.37
COL6A2P12110 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
COL6A2P12110 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.35■□□□□ 0.37
COL6A2P12110 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A2P12110 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A2P12110 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.34■□□□□ 0.37
COL6A2P12110 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A2P12110 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 AL137013.1-201ENST00000432946 1228 ntBASIC17.34■□□□□ 0.37
COL6A2P12110 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.34■□□□□ 0.37
COL6A2P12110 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.34■□□□□ 0.37
COL6A2P12110 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 AC005332.3-201ENST00000589904 676 ntBASIC17.34■□□□□ 0.37
COL6A2P12110 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.34■□□□□ 0.37
COL6A2P12110 AL390719.2-201ENST00000606993 987 ntBASIC17.34■□□□□ 0.37
COL6A2P12110 AC005363.2-201ENST00000618631 242 ntBASIC17.34■□□□□ 0.37
COL6A2P12110 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A2P12110 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A2P12110 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
COL6A2P12110 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A2P12110 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A2P12110 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A2P12110 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.33■□□□□ 0.37
COL6A2P12110 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms