Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS4BO75351 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
VPS4BO75351 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VPS4BO75351 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS4BO75351 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS4BO75351 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS4BO75351 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS4BO75351 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS4BO75351 AC034232.1-201ENST00000506026 1064 ntBASIC17.24■□□□□ 0.35
VPS4BO75351 LINC01711-201ENST00000598340 967 ntBASIC17.24■□□□□ 0.35
VPS4BO75351 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VPS4BO75351 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS4BO75351 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS4BO75351 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
VPS4BO75351 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS4BO75351 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS4BO75351 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS4BO75351 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS4BO75351 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VPS4BO75351 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.23■□□□□ 0.35
VPS4BO75351 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 AL022342.1-201ENST00000400363 863 ntBASIC17.23■□□□□ 0.35
VPS4BO75351 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS4BO75351 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS4BO75351 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS4BO75351 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.23■□□□□ 0.35
VPS4BO75351 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS4BO75351 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS4BO75351 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VPS4BO75351 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS4BO75351 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS4BO75351 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS4BO75351 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VPS4BO75351 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 AC012313.1-201ENST00000593393 3059 ntBASIC17.22■□□□□ 0.35
VPS4BO75351 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
VPS4BO75351 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 AC009949.1-201ENST00000623048 1830 ntBASIC17.22■□□□□ 0.35
VPS4BO75351 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
VPS4BO75351 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VPS4BO75351 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 HBZP1-201ENST00000354915 429 ntBASIC17.22■□□□□ 0.35
VPS4BO75351 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS4BO75351 KRT18P65-201ENST00000439811 1286 ntBASIC17.22■□□□□ 0.35
VPS4BO75351 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS4BO75351 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS4BO75351 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS4BO75351 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS4BO75351 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms