Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 MIR4651-201ENST00000582622 73 ntBASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 RPS15-203ENST00000586096 570 ntTSL 2 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 RCC2P3-201ENST00000418112 1537 ntBASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RPUSD4Q96CM3 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 AC130371.2-201ENST00000619443 611 ntBASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPUSD4Q96CM3 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.02□□□□□ -0.16
RPUSD4Q96CM3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms