Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.54■□□□□ 0.56
BDNFP23560 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
BDNFP23560 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BDNFP23560 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.53■□□□□ 0.56
BDNFP23560 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
BDNFP23560 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
BDNFP23560 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
BDNFP23560 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 AC003669.1-201ENST00000334569 611 ntBASIC18.53■□□□□ 0.56
BDNFP23560 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.53■□□□□ 0.56
BDNFP23560 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.53■□□□□ 0.56
BDNFP23560 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
BDNFP23560 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.53■□□□□ 0.56
BDNFP23560 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
BDNFP23560 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.53■□□□□ 0.56
BDNFP23560 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.53■□□□□ 0.56
BDNFP23560 AC012640.2-201ENST00000561606 901 ntBASIC18.53■□□□□ 0.56
BDNFP23560 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.53■□□□□ 0.56
BDNFP23560 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.53■□□□□ 0.56
BDNFP23560 AC006116.8-202ENST00000587620 1550 ntBASIC18.53■□□□□ 0.56
BDNFP23560 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.53■□□□□ 0.56
BDNFP23560 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 BX640515.1-201ENST00000617215 977 ntBASIC18.53■□□□□ 0.56
BDNFP23560 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.53■□□□□ 0.56
BDNFP23560 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
BDNFP23560 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
BDNFP23560 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 IL9RP2-201ENST00000423948 1312 ntBASIC18.52■□□□□ 0.56
BDNFP23560 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
BDNFP23560 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
BDNFP23560 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
BDNFP23560 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
BDNFP23560 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
BDNFP23560 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 NOC2LP1-202ENST00000452600 2235 ntBASIC18.52■□□□□ 0.56
BDNFP23560 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.52■□□□□ 0.56
BDNFP23560 AL022342.1-201ENST00000400363 863 ntBASIC18.52■□□□□ 0.56
BDNFP23560 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.52■□□□□ 0.56
BDNFP23560 AC005104.2-201ENST00000427818 678 ntBASIC18.52■□□□□ 0.56
BDNFP23560 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.52■□□□□ 0.56
BDNFP23560 PRYP5-201ENST00000451909 266 ntBASIC18.52■□□□□ 0.56
BDNFP23560 STK19B-204ENST00000512515 211 ntBASIC18.52■□□□□ 0.56
BDNFP23560 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.52■□□□□ 0.56
BDNFP23560 AC139887.3-201ENST00000568585 713 ntBASIC18.52■□□□□ 0.56
BDNFP23560 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.52■□□□□ 0.56
BDNFP23560 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
BDNFP23560 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.52■□□□□ 0.56
BDNFP23560 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.52■□□□□ 0.56
BDNFP23560 AC116407.3-201ENST00000623905 1129 ntBASIC18.52■□□□□ 0.56
BDNFP23560 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.52■□□□□ 0.56
BDNFP23560 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.52■□□□□ 0.56
BDNFP23560 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
BDNFP23560 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
BDNFP23560 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
BDNFP23560 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
BDNFP23560 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.51■□□□□ 0.55
BDNFP23560 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.51■□□□□ 0.55
BDNFP23560 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
BDNFP23560 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.51■□□□□ 0.55
BDNFP23560 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.51■□□□□ 0.55
BDNFP23560 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.51■□□□□ 0.55
BDNFP23560 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.51■□□□□ 0.55
BDNFP23560 AC107918.4-202ENST00000641623 219 ntBASIC18.51■□□□□ 0.55
BDNFP23560 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
BDNFP23560 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms