Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HNRNPRP1-201ENST00000453465 1695 ntBASIC23.06■■□□□ 1.28
COL3A1P02461 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
COL3A1P02461 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL3A1P02461 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL3A1P02461 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL3A1P02461 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC23.06■■□□□ 1.28
COL3A1P02461 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC23.06■■□□□ 1.28
COL3A1P02461 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL3A1P02461 PP12613-201ENST00000424958 2230 ntBASIC23.06■■□□□ 1.28
COL3A1P02461 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
COL3A1P02461 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC23.06■■□□□ 1.28
COL3A1P02461 AL133373.2-201ENST00000623187 2828 ntBASIC23.06■■□□□ 1.28
COL3A1P02461 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC23.05■■□□□ 1.28
COL3A1P02461 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC23.05■■□□□ 1.28
COL3A1P02461 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC23.05■■□□□ 1.28
COL3A1P02461 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC23.05■■□□□ 1.28
COL3A1P02461 HCG4B-203ENST00000450128 991 ntBASIC23.05■■□□□ 1.28
COL3A1P02461 AC087163.2-201ENST00000457299 853 ntBASIC23.05■■□□□ 1.28
COL3A1P02461 HS6ST1P1-201ENST00000481504 1234 ntBASIC23.05■■□□□ 1.28
COL3A1P02461 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
COL3A1P02461 POLD4-207ENST00000531239 584 ntTSL 2 BASIC23.05■■□□□ 1.28
COL3A1P02461 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC23.05■■□□□ 1.28
COL3A1P02461 DUX4L17-201ENST00000557360 1267 ntBASIC23.05■■□□□ 1.28
COL3A1P02461 AC064836.3-201ENST00000607928 673 ntBASIC23.05■■□□□ 1.28
COL3A1P02461 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC23.05■■□□□ 1.28
COL3A1P02461 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 LINC00896-202ENST00000609602 2128 ntBASIC23.05■■□□□ 1.28
COL3A1P02461 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC23.05■■□□□ 1.28
COL3A1P02461 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL3A1P02461 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC23.05■■□□□ 1.28
COL3A1P02461 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
COL3A1P02461 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC23.05■■□□□ 1.28
COL3A1P02461 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
COL3A1P02461 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC23.05■■□□□ 1.28
COL3A1P02461 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC23.05■■□□□ 1.28
COL3A1P02461 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC23.05■■□□□ 1.28
COL3A1P02461 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC23.05■■□□□ 1.28
COL3A1P02461 AC010654.1-201ENST00000615722 808 ntBASIC23.05■■□□□ 1.28
COL3A1P02461 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL3A1P02461 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL3A1P02461 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL3A1P02461 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC23.04■■□□□ 1.28
COL3A1P02461 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL3A1P02461 PKD1P6-201ENST00000343738 4769 ntBASIC23.04■■□□□ 1.28
COL3A1P02461 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC23.04■■□□□ 1.28
COL3A1P02461 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
COL3A1P02461 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL3A1P02461 SLC25A6P2-201ENST00000497974 877 ntBASIC23.04■■□□□ 1.28
COL3A1P02461 AC107918.2-201ENST00000530817 355 ntBASIC23.04■■□□□ 1.28
COL3A1P02461 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
COL3A1P02461 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC23.04■■□□□ 1.28
COL3A1P02461 AC010507.1-201ENST00000633895 436 ntBASIC23.04■■□□□ 1.28
COL3A1P02461 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC23.04■■□□□ 1.28
COL3A1P02461 ZNF259P1-201ENST00000407656 1365 ntBASIC23.04■■□□□ 1.28
COL3A1P02461 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC23.04■■□□□ 1.28
COL3A1P02461 EGFEM1P-202ENST00000431685 1563 ntBASIC23.04■■□□□ 1.28
COL3A1P02461 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL3A1P02461 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
COL3A1P02461 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC23.03■■□□□ 1.28
COL3A1P02461 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
COL3A1P02461 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC23.03■■□□□ 1.28
COL3A1P02461 AL591424.1-201ENST00000442569 1213 ntBASIC23.03■■□□□ 1.28
COL3A1P02461 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 AC027601.4-201ENST00000611259 610 ntBASIC23.03■■□□□ 1.28
COL3A1P02461 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC23.03■■□□□ 1.28
COL3A1P02461 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL3A1P02461 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL3A1P02461 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL3A1P02461 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC23.02■■□□□ 1.28
COL3A1P02461 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC23.02■■□□□ 1.28
COL3A1P02461 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC23.02■■□□□ 1.28
COL3A1P02461 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC23.02■■□□□ 1.28
COL3A1P02461 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC23.02■■□□□ 1.28
COL3A1P02461 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
COL3A1P02461 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC23.02■■□□□ 1.28
COL3A1P02461 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL3A1P02461 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL3A1P02461 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL3A1P02461 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL3A1P02461 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC23.02■■□□□ 1.28
COL3A1P02461 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC23.02■■□□□ 1.28
COL3A1P02461 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL3A1P02461 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
COL3A1P02461 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL3A1P02461 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms