Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.02■□□□□ 0.64
RNF40O75150 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF40O75150 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF40O75150 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.02■□□□□ 0.64
RNF40O75150 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF40O75150 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF40O75150 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
RNF40O75150 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF40O75150 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF40O75150 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RNF40O75150 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF40O75150 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RNF40O75150 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
RNF40O75150 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF40O75150 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
RNF40O75150 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
RNF40O75150 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF40O75150 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF40O75150 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.63
RNF40O75150 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
RNF40O75150 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF40O75150 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF40O75150 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
RNF40O75150 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF40O75150 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.01■□□□□ 0.63
RNF40O75150 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.01■□□□□ 0.63
RNF40O75150 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 FAAHP1-202ENST00000446499 1238 ntBASIC19.01■□□□□ 0.63
RNF40O75150 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.01■□□□□ 0.63
RNF40O75150 RNF126P1-202ENST00000569893 925 ntBASIC19.01■□□□□ 0.63
RNF40O75150 IFNL4P1-201ENST00000607083 540 ntBASIC19.01■□□□□ 0.63
RNF40O75150 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.01■□□□□ 0.63
RNF40O75150 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
RNF40O75150 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
RNF40O75150 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.01■□□□□ 0.63
RNF40O75150 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
RNF40O75150 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF40O75150 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF40O75150 LINC00602-201ENST00000629776 2065 ntBASIC19.01■□□□□ 0.63
RNF40O75150 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 KRT8P10-201ENST00000450021 1447 ntBASIC19■□□□□ 0.63
RNF40O75150 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19■□□□□ 0.63
RNF40O75150 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19■□□□□ 0.63
RNF40O75150 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
RNF40O75150 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19■□□□□ 0.63
RNF40O75150 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19■□□□□ 0.63
RNF40O75150 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19■□□□□ 0.63
RNF40O75150 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19■□□□□ 0.63
RNF40O75150 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19■□□□□ 0.63
RNF40O75150 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 AC012183.1-201ENST00000625197 499 ntBASIC19■□□□□ 0.63
RNF40O75150 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
RNF40O75150 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF40O75150 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19■□□□□ 0.63
RNF40O75150 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19■□□□□ 0.63
RNF40O75150 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19■□□□□ 0.63
RNF40O75150 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19■□□□□ 0.63
RNF40O75150 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
RNF40O75150 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF40O75150 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
RNF40O75150 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.99■□□□□ 0.63
RNF40O75150 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.99■□□□□ 0.63
RNF40O75150 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RNF40O75150 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RNF40O75150 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF40O75150 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF40O75150 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.99■□□□□ 0.63
RNF40O75150 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.99■□□□□ 0.63
RNF40O75150 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.99■□□□□ 0.63
RNF40O75150 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF40O75150 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms