Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 KRT18P2-201ENST00000447938 1258 ntBASIC17.85■□□□□ 0.45
HOXC11O43248 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.85■□□□□ 0.45
HOXC11O43248 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.85■□□□□ 0.45
HOXC11O43248 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
HOXC11O43248 AC009113.1-201ENST00000570267 2443 ntBASIC17.85■□□□□ 0.45
HOXC11O43248 MIR4751-201ENST00000578027 74 ntBASIC17.85■□□□□ 0.45
HOXC11O43248 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.85■□□□□ 0.45
HOXC11O43248 AC010327.4-202ENST00000591484 748 ntBASIC17.85■□□□□ 0.45
HOXC11O43248 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.85■□□□□ 0.45
HOXC11O43248 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.84■□□□□ 0.45
HOXC11O43248 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.84■□□□□ 0.45
HOXC11O43248 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.84■□□□□ 0.45
HOXC11O43248 AP002414.1-201ENST00000391405 1147 ntBASIC17.84■□□□□ 0.45
HOXC11O43248 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.84■□□□□ 0.45
HOXC11O43248 HCG4B-203ENST00000450128 991 ntBASIC17.84■□□□□ 0.45
HOXC11O43248 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.84■□□□□ 0.45
HOXC11O43248 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.84■□□□□ 0.45
HOXC11O43248 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.84■□□□□ 0.45
HOXC11O43248 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.84■□□□□ 0.45
HOXC11O43248 MIR3687-2-201ENST00000577708 61 ntBASIC17.84■□□□□ 0.45
HOXC11O43248 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.84■□□□□ 0.45
HOXC11O43248 MIR3687-1-201ENST00000614492 61 ntBASIC17.84■□□□□ 0.45
HOXC11O43248 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.84■□□□□ 0.45
HOXC11O43248 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
HOXC11O43248 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
HOXC11O43248 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HOXC11O43248 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HOXC11O43248 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.83■□□□□ 0.45
HOXC11O43248 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
HOXC11O43248 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HOXC11O43248 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HOXC11O43248 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.83■□□□□ 0.45
HOXC11O43248 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.83■□□□□ 0.45
HOXC11O43248 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.83■□□□□ 0.45
HOXC11O43248 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
HOXC11O43248 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.45
HOXC11O43248 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
HOXC11O43248 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
HOXC11O43248 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 AC023274.1-201ENST00000418278 595 ntBASIC17.83■□□□□ 0.44
HOXC11O43248 ACTG1P4-201ENST00000425123 1122 ntBASIC17.83■□□□□ 0.44
HOXC11O43248 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.83■□□□□ 0.44
HOXC11O43248 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.83■□□□□ 0.44
HOXC11O43248 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.83■□□□□ 0.44
HOXC11O43248 AC055717.3-201ENST00000622967 595 ntBASIC17.83■□□□□ 0.44
HOXC11O43248 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.83■□□□□ 0.44
HOXC11O43248 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
HOXC11O43248 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
HOXC11O43248 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HOXC11O43248 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
HOXC11O43248 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC11O43248 PTCHD3P3-201ENST00000403073 906 ntBASIC17.82■□□□□ 0.44
HOXC11O43248 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 AC112482.1-201ENST00000492080 688 ntBASIC17.82■□□□□ 0.44
HOXC11O43248 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.82■□□□□ 0.44
HOXC11O43248 MTDHP5-201ENST00000598980 586 ntBASIC17.82■□□□□ 0.44
HOXC11O43248 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.82■□□□□ 0.44
HOXC11O43248 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.82■□□□□ 0.44
HOXC11O43248 AC010654.1-201ENST00000615722 808 ntBASIC17.82■□□□□ 0.44
HOXC11O43248 AL691403.2-201ENST00000618460 490 ntBASIC17.82■□□□□ 0.44
HOXC11O43248 AC004790.2-201ENST00000623588 572 ntBASIC17.82■□□□□ 0.44
HOXC11O43248 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms