Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FAM58DP-201ENST00000428076 619 ntBASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 GSAP-205ENST00000430584 600 ntTSL 5 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 HNRNPRP1-201ENST00000453465 1695 ntBASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 CD81-202ENST00000381036 880 ntTSL 3 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 AC069335.1-201ENST00000489972 472 ntBASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 AC067863.1-201ENST00000494933 530 ntBASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 NMU-203ENST00000507338 658 ntTSL 3 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 AC129492.6-201ENST00000611383 1305 ntBASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 PMS2P4-201ENST00000412466 1052 ntBASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC22.54■■□□□ 1.2
SHANK3Q9BYB0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 AC069262.1-201ENST00000539058 672 ntBASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 YTHDF3-AS1-201ENST00000603538 718 ntBASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 AC012645.4-201ENST00000610691 1061 ntBASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK3Q9BYB0 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 UGT1A2P-201ENST00000454886 866 ntBASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 NAA60-208ENST00000570819 833 ntTSL 2 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 HFE2-206ENST00000634927 506 ntTSL 4 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 KRT18P55-202ENST00000578578 1546 ntBASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK3Q9BYB0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 GK-202ENST00000378941 458 ntTSL 3 BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 FAM185BP-201ENST00000443595 716 ntBASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK3Q9BYB0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms