Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 AC104109.2-201ENST00000602919 1418 ntBASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 LINC00896-202ENST00000609602 2128 ntBASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 AC148477.5-201ENST00000625164 1645 ntBASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 RBM17P3-201ENST00000417687 1192 ntBASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 AC122714.2-201ENST00000502787 707 ntBASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 PMPCAP1-201ENST00000508114 1576 ntBASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 AP005117.1-201ENST00000584346 1413 ntBASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ABCD1P5-201ENST00000445663 754 ntBASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 FGFR3P6-201ENST00000457012 610 ntBASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 AC109462.3-201ENST00000573934 613 ntBASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-3Q8TAU0 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 AL353593.2-201ENST00000602529 1483 ntBASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 AC040169.1-201ENST00000565382 521 ntBASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-3Q8TAU0 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 YBX2P1-201ENST00000394192 760 ntBASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
NKX2-3Q8TAU0 AC112482.1-201ENST00000492080 688 ntBASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms