Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HDDC3Q8N4P3 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HDDC3Q8N4P3 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 UNC93B6-202ENST00000528242 690 ntBASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 MTDHP5-201ENST00000598980 586 ntBASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 MIR1199-201ENST00000621445 119 ntBASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDDC3Q8N4P3 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 AC211486.1-202ENST00000416371 468 ntBASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 AC007967.2-201ENST00000432613 625 ntBASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 AC211476.1-201ENST00000503899 468 ntBASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 IGHV3-52-201ENST00000519770 353 ntBASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.63■□□□□ 0.41
HDDC3Q8N4P3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 AC148477.5-201ENST00000625164 1645 ntBASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 AC003669.1-201ENST00000334569 611 ntBASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms