Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ACTG1P4-201ENST00000425123 1122 ntBASIC14.4□□□□□ -0.1
LMO4P61968 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.4□□□□□ -0.1
LMO4P61968 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.4□□□□□ -0.1
LMO4P61968 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.4□□□□□ -0.1
LMO4P61968 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.4□□□□□ -0.1
LMO4P61968 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.4□□□□□ -0.1
LMO4P61968 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.4□□□□□ -0.1
LMO4P61968 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.4□□□□□ -0.1
LMO4P61968 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.4□□□□□ -0.1
LMO4P61968 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.4□□□□□ -0.1
LMO4P61968 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.4□□□□□ -0.1
LMO4P61968 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
LMO4P61968 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMO4P61968 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
LMO4P61968 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
LMO4P61968 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
LMO4P61968 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
LMO4P61968 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMO4P61968 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.4□□□□□ -0.1
LMO4P61968 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.4□□□□□ -0.1
LMO4P61968 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
LMO4P61968 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMO4P61968 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMO4P61968 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LMO4P61968 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMO4P61968 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LMO4P61968 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
LMO4P61968 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.39□□□□□ -0.11
LMO4P61968 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 AC092183.1-201ENST00000469884 875 ntBASIC14.39□□□□□ -0.11
LMO4P61968 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.39□□□□□ -0.11
LMO4P61968 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 GGTLC5P-201ENST00000617623 998 ntBASIC14.39□□□□□ -0.11
LMO4P61968 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC14.39□□□□□ -0.11
LMO4P61968 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC14.39□□□□□ -0.11
LMO4P61968 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LMO4P61968 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LMO4P61968 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC14.38□□□□□ -0.11
LMO4P61968 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC14.38□□□□□ -0.11
LMO4P61968 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.38□□□□□ -0.11
LMO4P61968 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.38□□□□□ -0.11
LMO4P61968 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LMO4P61968 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
LMO4P61968 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.38□□□□□ -0.11
LMO4P61968 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 MRPL20P1-201ENST00000400819 433 ntBASIC14.38□□□□□ -0.11
LMO4P61968 MCCD1P2-201ENST00000423228 335 ntBASIC14.38□□□□□ -0.11
LMO4P61968 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.38□□□□□ -0.11
LMO4P61968 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.38□□□□□ -0.11
LMO4P61968 AC010654.1-201ENST00000615722 808 ntBASIC14.38□□□□□ -0.11
LMO4P61968 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.38□□□□□ -0.11
LMO4P61968 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.38□□□□□ -0.11
LMO4P61968 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms