Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CXCL12P48061 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.42■□□□□ 0.38
CXCL12P48061 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.42■□□□□ 0.38
CXCL12P48061 AL671277.1-201ENST00000429656 993 ntBASIC17.42■□□□□ 0.38
CXCL12P48061 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.42■□□□□ 0.38
CXCL12P48061 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.42■□□□□ 0.38
CXCL12P48061 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.42■□□□□ 0.38
CXCL12P48061 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.42■□□□□ 0.38
CXCL12P48061 AL390955.2-201ENST00000603032 514 ntBASIC17.42■□□□□ 0.38
CXCL12P48061 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.42■□□□□ 0.38
CXCL12P48061 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.42■□□□□ 0.38
CXCL12P48061 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CXCL12P48061 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.42■□□□□ 0.38
CXCL12P48061 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 AC063926.2-201ENST00000623766 1308 ntBASIC17.42■□□□□ 0.38
CXCL12P48061 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.41■□□□□ 0.38
CXCL12P48061 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.41■□□□□ 0.38
CXCL12P48061 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.41■□□□□ 0.38
CXCL12P48061 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.41■□□□□ 0.38
CXCL12P48061 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CXCL12P48061 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 AC100803.2-201ENST00000562459 1963 ntBASIC17.41■□□□□ 0.38
CXCL12P48061 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.41■□□□□ 0.38
CXCL12P48061 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.41■□□□□ 0.38
CXCL12P48061 AC005034.1-201ENST00000426657 489 ntBASIC17.41■□□□□ 0.38
CXCL12P48061 ADH5P3-201ENST00000433842 1137 ntBASIC17.41■□□□□ 0.38
CXCL12P48061 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.41■□□□□ 0.38
CXCL12P48061 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CXCL12P48061 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.41■□□□□ 0.38
CXCL12P48061 AL035252.4-201ENST00000624174 288 ntBASIC17.41■□□□□ 0.38
CXCL12P48061 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 AC009949.1-201ENST00000623048 1830 ntBASIC17.41■□□□□ 0.38
CXCL12P48061 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.41■□□□□ 0.38
CXCL12P48061 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.41■□□□□ 0.38
CXCL12P48061 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CXCL12P48061 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.41■□□□□ 0.38
CXCL12P48061 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
CXCL12P48061 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL12P48061 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.4■□□□□ 0.38
CXCL12P48061 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 AL096828.2-201ENST00000567259 1965 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.4■□□□□ 0.38
CXCL12P48061 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 AC015922.1-201ENST00000421102 1152 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 CNN2P2-201ENST00000443536 909 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 CNN2P3-201ENST00000450201 906 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 SPDYE11-202ENST00000450699 704 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.4■□□□□ 0.38
CXCL12P48061 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.4■□□□□ 0.38
CXCL12P48061 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.4■□□□□ 0.38
CXCL12P48061 SPDYE9P-201ENST00000570642 692 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.4■□□□□ 0.38
CXCL12P48061 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL12P48061 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.4■□□□□ 0.38
CXCL12P48061 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.4■□□□□ 0.38
CXCL12P48061 SPDYE10P-202ENST00000612005 668 ntBASIC17.4■□□□□ 0.38
CXCL12P48061 ACTL9-202ENST00000612068 1252 ntBASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms