Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 ARMC10P1-201ENST00000313754 855 ntBASIC14.29□□□□□ -0.12
FOXA2Q9Y261 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 AL031133.1-201ENST00000406807 723 ntBASIC14.29□□□□□ -0.12
FOXA2Q9Y261 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 REXO1L11P-201ENST00000620964 1927 ntBASIC14.29□□□□□ -0.12
FOXA2Q9Y261 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 PCDHA12-202ENST00000613593 2588 ntBASIC14.29□□□□□ -0.12
FOXA2Q9Y261 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 MIR662-201ENST00000384847 95 ntBASIC14.28□□□□□ -0.12
FOXA2Q9Y261 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 AL645929.1-201ENST00000420084 975 ntBASIC14.28□□□□□ -0.12
FOXA2Q9Y261 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 AP003733.1-201ENST00000491725 852 ntBASIC14.28□□□□□ -0.12
FOXA2Q9Y261 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 CD320-202ENST00000537716 1119 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 AL445228.2-201ENST00000605589 952 ntBASIC14.28□□□□□ -0.12
FOXA2Q9Y261 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA2Q9Y261 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.27□□□□□ -0.12
FOXA2Q9Y261 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
FOXA2Q9Y261 KRT8P47-201ENST00000604727 1398 ntBASIC14.27□□□□□ -0.12
FOXA2Q9Y261 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 AL136038.3-201ENST00000561909 1096 ntBASIC14.27□□□□□ -0.13
FOXA2Q9Y261 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms