Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC4Q92889 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
ERCC4Q92889 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
ERCC4Q92889 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC4Q92889 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 SLC25A3P1-201ENST00000443844 931 ntBASIC20.02■□□□□ 0.8
ERCC4Q92889 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.02■□□□□ 0.8
ERCC4Q92889 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.02■□□□□ 0.8
ERCC4Q92889 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.02■□□□□ 0.8
ERCC4Q92889 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.02■□□□□ 0.8
ERCC4Q92889 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC4Q92889 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
ERCC4Q92889 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC4Q92889 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
ERCC4Q92889 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC4Q92889 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
ERCC4Q92889 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
ERCC4Q92889 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
ERCC4Q92889 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
ERCC4Q92889 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
ERCC4Q92889 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.79
ERCC4Q92889 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.01■□□□□ 0.79
ERCC4Q92889 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.01■□□□□ 0.79
ERCC4Q92889 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
ERCC4Q92889 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
ERCC4Q92889 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.01■□□□□ 0.79
ERCC4Q92889 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.01■□□□□ 0.79
ERCC4Q92889 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
ERCC4Q92889 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.01■□□□□ 0.79
ERCC4Q92889 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.01■□□□□ 0.79
ERCC4Q92889 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.01■□□□□ 0.79
ERCC4Q92889 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.01■□□□□ 0.79
ERCC4Q92889 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
ERCC4Q92889 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.01■□□□□ 0.79
ERCC4Q92889 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.01■□□□□ 0.79
ERCC4Q92889 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
ERCC4Q92889 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.01■□□□□ 0.79
ERCC4Q92889 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC4Q92889 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
ERCC4Q92889 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 AL391807.1-203ENST00000604392 2365 ntBASIC20■□□□□ 0.79
ERCC4Q92889 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20■□□□□ 0.79
ERCC4Q92889 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20■□□□□ 0.79
ERCC4Q92889 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20■□□□□ 0.79
ERCC4Q92889 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 AC087499.1-201ENST00000418141 1075 ntBASIC20■□□□□ 0.79
ERCC4Q92889 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 AL441883.1-201ENST00000566170 1045 ntBASIC20■□□□□ 0.79
ERCC4Q92889 AL512604.3-201ENST00000569583 964 ntBASIC20■□□□□ 0.79
ERCC4Q92889 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20■□□□□ 0.79
ERCC4Q92889 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
ERCC4Q92889 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ERCC4Q92889 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC4Q92889 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20■□□□□ 0.79
ERCC4Q92889 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
ERCC4Q92889 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms