Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 MYCLP1-201ENST00000372451 1075 ntBASIC23.74■■□□□ 1.39
NPHP3Q7Z494 AC107890.1-201ENST00000422478 521 ntBASIC23.74■■□□□ 1.39
NPHP3Q7Z494 FAM58DP-201ENST00000428076 619 ntBASIC23.74■■□□□ 1.39
NPHP3Q7Z494 GPS2P2-201ENST00000430745 888 ntBASIC23.74■■□□□ 1.39
NPHP3Q7Z494 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 HNRNPA1P40-201ENST00000426371 1278 ntBASIC23.73■■□□□ 1.39
NPHP3Q7Z494 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 AC008761.3-201ENST00000624803 892 ntBASIC23.73■■□□□ 1.39
NPHP3Q7Z494 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
NPHP3Q7Z494 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP3Q7Z494 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP3Q7Z494 EFTUD1P1-204ENST00000560401 1798 ntBASIC23.72■■□□□ 1.39
NPHP3Q7Z494 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP3Q7Z494 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP3Q7Z494 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC23.72■■□□□ 1.39
NPHP3Q7Z494 AC125807.1-201ENST00000483097 614 ntBASIC23.72■■□□□ 1.39
NPHP3Q7Z494 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP3Q7Z494 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC23.72■■□□□ 1.39
NPHP3Q7Z494 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 WRB-204ENST00000398753 699 ntTSL 3 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 AC243562.1-201ENST00000560672 389 ntBASIC23.71■■□□□ 1.39
NPHP3Q7Z494 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 CECR7-204ENST00000609932 568 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP3Q7Z494 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC23.7■■□□□ 1.39
NPHP3Q7Z494 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 AC140878.1-201ENST00000565277 250 ntBASIC23.7■■□□□ 1.38
NPHP3Q7Z494 LINC02560-201ENST00000596379 459 ntBASIC23.7■■□□□ 1.38
NPHP3Q7Z494 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 AC009949.1-201ENST00000623048 1830 ntBASIC23.7■■□□□ 1.38
NPHP3Q7Z494 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC23.7■■□□□ 1.38
NPHP3Q7Z494 AC129492.6-201ENST00000611383 1305 ntBASIC23.7■■□□□ 1.38
NPHP3Q7Z494 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 BAD-202ENST00000394531 631 ntTSL 3 BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 RAC2-204ENST00000406508 893 ntTSL 5 BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 SLC25A6P2-201ENST00000497974 877 ntBASIC23.69■■□□□ 1.38
NPHP3Q7Z494 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 BAD-207ENST00000544785 525 ntTSL 3 BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP3Q7Z494 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms