Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.72■□□□□ 0.27
RAE1P78406 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.72■□□□□ 0.27
RAE1P78406 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RAE1P78406 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 CHCHD2P8-201ENST00000429873 447 ntBASIC16.72■□□□□ 0.27
RAE1P78406 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.72■□□□□ 0.27
RAE1P78406 BX276092.5-203ENST00000456199 560 ntBASIC16.72■□□□□ 0.27
RAE1P78406 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.72■□□□□ 0.27
RAE1P78406 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.72■□□□□ 0.27
RAE1P78406 AC109462.3-201ENST00000573934 613 ntBASIC16.72■□□□□ 0.27
RAE1P78406 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.72■□□□□ 0.27
RAE1P78406 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
RAE1P78406 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 AL121672.3-201ENST00000608644 468 ntBASIC16.72■□□□□ 0.27
RAE1P78406 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.72■□□□□ 0.27
RAE1P78406 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.72■□□□□ 0.27
RAE1P78406 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.72■□□□□ 0.27
RAE1P78406 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
RAE1P78406 AC116353.5-201ENST00000638148 1699 ntBASIC16.72■□□□□ 0.27
RAE1P78406 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.72■□□□□ 0.27
RAE1P78406 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
RAE1P78406 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RAE1P78406 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.72■□□□□ 0.27
RAE1P78406 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.72■□□□□ 0.27
RAE1P78406 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.71■□□□□ 0.27
RAE1P78406 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.71■□□□□ 0.27
RAE1P78406 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.71■□□□□ 0.27
RAE1P78406 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
RAE1P78406 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 SLC25A1P3-201ENST00000395415 828 ntBASIC16.71■□□□□ 0.27
RAE1P78406 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 AC246785.2-201ENST00000432512 513 ntBASIC16.71■□□□□ 0.27
RAE1P78406 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 AC122714.2-201ENST00000502787 707 ntBASIC16.71■□□□□ 0.27
RAE1P78406 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.71■□□□□ 0.27
RAE1P78406 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
RAE1P78406 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.71■□□□□ 0.27
RAE1P78406 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.71■□□□□ 0.27
RAE1P78406 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
RAE1P78406 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 AL049757.1-201ENST00000616842 1596 ntBASIC16.71■□□□□ 0.27
RAE1P78406 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.71■□□□□ 0.27
RAE1P78406 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RAE1P78406 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
RAE1P78406 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.26
RAE1P78406 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.7■□□□□ 0.26
RAE1P78406 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.7■□□□□ 0.26
RAE1P78406 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
RAE1P78406 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.7■□□□□ 0.26
RAE1P78406 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.7■□□□□ 0.26
RAE1P78406 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
RAE1P78406 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.7■□□□□ 0.26
RAE1P78406 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.7■□□□□ 0.26
RAE1P78406 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
RAE1P78406 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
RAE1P78406 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.7■□□□□ 0.26
RAE1P78406 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 PCED1CP-201ENST00000419887 785 ntBASIC16.7■□□□□ 0.26
RAE1P78406 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RAE1P78406 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms