Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.99■□□□□ 0.95
COL4A5P29400 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
COL4A5P29400 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
COL4A5P29400 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A5P29400 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC20.99■□□□□ 0.95
COL4A5P29400 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 AC007274.1-201ENST00000439805 662 ntBASIC20.99■□□□□ 0.95
COL4A5P29400 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC20.99■□□□□ 0.95
COL4A5P29400 GATB-205ENST00000508611 605 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A5P29400 AC243562.1-201ENST00000560672 389 ntBASIC20.99■□□□□ 0.95
COL4A5P29400 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
COL4A5P29400 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.98■□□□□ 0.95
COL4A5P29400 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL4A5P29400 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL4A5P29400 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.98■□□□□ 0.95
COL4A5P29400 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.98■□□□□ 0.95
COL4A5P29400 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.98■□□□□ 0.95
COL4A5P29400 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.98■□□□□ 0.95
COL4A5P29400 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A5P29400 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
COL4A5P29400 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.97■□□□□ 0.95
COL4A5P29400 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC20.97■□□□□ 0.95
COL4A5P29400 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
COL4A5P29400 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.97■□□□□ 0.95
COL4A5P29400 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.97■□□□□ 0.95
COL4A5P29400 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.97■□□□□ 0.95
COL4A5P29400 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A5P29400 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A5P29400 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 AC002056.1-201ENST00000395613 760 ntBASIC20.96■□□□□ 0.95
COL4A5P29400 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A5P29400 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A5P29400 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 KLF2P3-201ENST00000451977 1087 ntBASIC20.96■□□□□ 0.95
COL4A5P29400 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 RNA5SP421-201ENST00000516864 134 ntBASIC20.96■□□□□ 0.95
COL4A5P29400 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 AL512356.2-201ENST00000546955 174 ntBASIC20.96■□□□□ 0.95
COL4A5P29400 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A5P29400 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A5P29400 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 FO538757.1-201ENST00000623083 1397 ntBASIC20.96■□□□□ 0.95
COL4A5P29400 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A5P29400 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.96■□□□□ 0.95
COL4A5P29400 TSPY16P-201ENST00000449843 468 ntBASIC20.96■□□□□ 0.95
COL4A5P29400 OARD1-208ENST00000469104 704 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL4A5P29400 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A5P29400 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A5P29400 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A5P29400 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A5P29400 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A5P29400 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.95■□□□□ 0.94
COL4A5P29400 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.95■□□□□ 0.94
COL4A5P29400 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
COL4A5P29400 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC20.95■□□□□ 0.94
COL4A5P29400 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.95■□□□□ 0.94
COL4A5P29400 TREML5P-201ENST00000421694 576 ntBASIC20.95■□□□□ 0.94
COL4A5P29400 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20.95■□□□□ 0.94
COL4A5P29400 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20.95■□□□□ 0.94
COL4A5P29400 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
COL4A5P29400 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 AL135999.2-201ENST00000622438 1686 ntBASIC20.95■□□□□ 0.94
COL4A5P29400 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A5P29400 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms