Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 KRT8P10-201ENST00000450021 1447 ntBASIC17.33■□□□□ 0.36
VPS4BO75351 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS4BO75351 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
VPS4BO75351 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.33■□□□□ 0.36
VPS4BO75351 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS4BO75351 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS4BO75351 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
VPS4BO75351 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS4BO75351 LINC00304-203ENST00000565008 1864 ntBASIC17.33■□□□□ 0.36
VPS4BO75351 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS4BO75351 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VPS4BO75351 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VPS4BO75351 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
VPS4BO75351 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS4BO75351 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VPS4BO75351 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VPS4BO75351 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 SEC1P-202ENST00000473944 940 ntBASIC17.32■□□□□ 0.36
VPS4BO75351 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS4BO75351 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.32■□□□□ 0.36
VPS4BO75351 GCSHP2-201ENST00000560971 527 ntBASIC17.32■□□□□ 0.36
VPS4BO75351 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS4BO75351 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS4BO75351 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VPS4BO75351 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 AP001094.4-201ENST00000579008 2176 ntBASIC17.32■□□□□ 0.36
VPS4BO75351 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS4BO75351 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS4BO75351 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
VPS4BO75351 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS4BO75351 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
VPS4BO75351 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 AD000864.1-201ENST00000624076 2295 ntBASIC17.31■□□□□ 0.36
VPS4BO75351 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
VPS4BO75351 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 KRT17P6-201ENST00000453795 1220 ntBASIC17.31■□□□□ 0.36
VPS4BO75351 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS4BO75351 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS4BO75351 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 NPAP1P7-201ENST00000613027 823 ntBASIC17.31■□□□□ 0.36
VPS4BO75351 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS4BO75351 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
VPS4BO75351 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS4BO75351 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS4BO75351 LINC00167-201ENST00000530583 1419 ntBASIC17.3■□□□□ 0.36
VPS4BO75351 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS4BO75351 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms