Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HMGN4O00479 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HMGN4O00479 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HMGN4O00479 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.41■□□□□ 0.22
HMGN4O00479 COX5BP2-201ENST00000392354 334 ntBASIC16.41■□□□□ 0.22
HMGN4O00479 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGN4O00479 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGN4O00479 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGN4O00479 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.41■□□□□ 0.22
HMGN4O00479 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGN4O00479 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.41■□□□□ 0.22
HMGN4O00479 LINC01238-205ENST00000567549 1107 ntBASIC16.41■□□□□ 0.22
HMGN4O00479 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.41■□□□□ 0.22
HMGN4O00479 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGN4O00479 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HMGN4O00479 AL139327.4-201ENST00000612362 153 ntBASIC16.41■□□□□ 0.22
HMGN4O00479 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HMGN4O00479 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HMGN4O00479 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HMGN4O00479 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGN4O00479 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGN4O00479 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
HMGN4O00479 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HMGN4O00479 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HMGN4O00479 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HMGN4O00479 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HMGN4O00479 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 TSPY22P-201ENST00000427496 604 ntBASIC16.4■□□□□ 0.22
HMGN4O00479 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.4■□□□□ 0.22
HMGN4O00479 RN7SL606P-201ENST00000472779 293 ntBASIC16.4■□□□□ 0.22
HMGN4O00479 AC002558.1-201ENST00000488906 803 ntBASIC16.4■□□□□ 0.22
HMGN4O00479 GUSBP12-201ENST00000513727 720 ntBASIC16.4■□□□□ 0.22
HMGN4O00479 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.4■□□□□ 0.22
HMGN4O00479 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGN4O00479 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HMGN4O00479 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGN4O00479 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGN4O00479 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
HMGN4O00479 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
HMGN4O00479 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HMGN4O00479 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGN4O00479 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
HMGN4O00479 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.22
HMGN4O00479 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
HMGN4O00479 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGN4O00479 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HMGN4O00479 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HMGN4O00479 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGN4O00479 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGN4O00479 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGN4O00479 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HMGN4O00479 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGN4O00479 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGN4O00479 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGN4O00479 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGN4O00479 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms