Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 AL136038.4-201ENST00000603606 1261 ntBASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM56Q9BRZ2 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 COX11P1-201ENST00000489116 835 ntBASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 RN7SL850P-201ENST00000579959 291 ntBASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 AC024563.2-201ENST00000603282 481 ntBASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 AC140113.3-201ENST00000605663 199 ntBASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 AC004263.2-201ENST00000617183 678 ntBASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 AC073508.3-201ENST00000619697 1419 ntBASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM56Q9BRZ2 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AC113347.1-201ENST00000413321 391 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AC117947.1-201ENST00000427448 529 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 LIN28AP1-201ENST00000429574 405 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 KRT18P57-201ENST00000443599 1254 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 ATP5G1P1-201ENST00000448724 379 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 KRT18P38-201ENST00000449496 1282 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 YBX1P2-201ENST00000489612 999 ntBASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM56Q9BRZ2 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms