Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 AL583810.1-201ENST00000553344 1045 ntBASIC17.71■□□□□ 0.43
TTC28Q96AY4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 TUBB1P2-201ENST00000422712 1306 ntBASIC17.71■□□□□ 0.43
TTC28Q96AY4 TUBB1P1-201ENST00000503144 1300 ntBASIC17.71■□□□□ 0.43
TTC28Q96AY4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.71■□□□□ 0.43
TTC28Q96AY4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TTC28Q96AY4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
TTC28Q96AY4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
TTC28Q96AY4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.71■□□□□ 0.42
TTC28Q96AY4 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
TTC28Q96AY4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.71■□□□□ 0.42
TTC28Q96AY4 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.71■□□□□ 0.42
TTC28Q96AY4 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
TTC28Q96AY4 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 AC093677.2-201ENST00000600169 1863 ntBASIC17.7■□□□□ 0.42
TTC28Q96AY4 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 ZNF767P-206ENST00000513792 565 ntBASIC17.7■□□□□ 0.42
TTC28Q96AY4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 AC008738.7-201ENST00000609744 511 ntBASIC17.7■□□□□ 0.42
TTC28Q96AY4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 HLA-V-204ENST00000476601 1289 ntBASIC17.7■□□□□ 0.42
TTC28Q96AY4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.7■□□□□ 0.42
TTC28Q96AY4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TTC28Q96AY4 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TTC28Q96AY4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TTC28Q96AY4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TTC28Q96AY4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 AL355994.2-201ENST00000447882 704 ntBASIC17.69■□□□□ 0.42
TTC28Q96AY4 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TTC28Q96AY4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TTC28Q96AY4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TTC28Q96AY4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.69■□□□□ 0.42
TTC28Q96AY4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms