Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 KRT8P50-201ENST00000562022 1438 ntBASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 PCDHA14-201ENST00000506751 2298 ntBASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 MIR564-202ENST00000385049 94 ntBASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 SDHAP2-201ENST00000455183 2001 ntBASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 AC105020.1-201ENST00000435356 2205 ntBASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF540Q8NDQ6 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 AC113347.1-201ENST00000413321 391 ntBASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 AL137013.1-201ENST00000432946 1228 ntBASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 AC128688.1-201ENST00000487626 519 ntBASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 AP005242.2-201ENST00000580065 1175 ntBASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 AC034236.2-201ENST00000606662 1610 ntBASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF540Q8NDQ6 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
ZNF540Q8NDQ6 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
ZNF540Q8NDQ6 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms