Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC10.81□□□□□ -0.68
HSPG2P98160 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC10.81□□□□□ -0.68
HSPG2P98160 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 CD7-202ENST00000578509 925 ntTSL 3 BASIC10.81□□□□□ -0.68
HSPG2P98160 AC004790.1-201ENST00000612686 536 ntBASIC10.81□□□□□ -0.68
HSPG2P98160 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 UXT-AS1-201ENST00000590504 1525 ntBASIC10.81□□□□□ -0.68
HSPG2P98160 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 ADM-207ENST00000530439 1839 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
HSPG2P98160 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC10.81□□□□□ -0.68
HSPG2P98160 GLI4-203ENST00000517468 963 ntTSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC10.81□□□□□ -0.68
HSPG2P98160 RPL28-206ENST00000558752 671 ntTSL 3 BASIC10.81□□□□□ -0.68
HSPG2P98160 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
HSPG2P98160 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC10.81□□□□□ -0.68
HSPG2P98160 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC10.8□□□□□ -0.68
HSPG2P98160 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC10.8□□□□□ -0.68
HSPG2P98160 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 ANKRD19P-201ENST00000338192 862 ntBASIC10.8□□□□□ -0.68
HSPG2P98160 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC10.8□□□□□ -0.68
HSPG2P98160 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC10.8□□□□□ -0.68
HSPG2P98160 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 FAM86MP-201ENST00000340703 885 ntBASIC10.8□□□□□ -0.68
HSPG2P98160 STX3-203ENST00000529177 1571 ntTSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 RAB43P1-201ENST00000561790 589 ntBASIC10.8□□□□□ -0.68
HSPG2P98160 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC10.8□□□□□ -0.68
HSPG2P98160 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC10.8□□□□□ -0.68
HSPG2P98160 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
HSPG2P98160 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
HSPG2P98160 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
HSPG2P98160 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
HSPG2P98160 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 AC140658.5-201ENST00000438532 169 ntBASIC10.79□□□□□ -0.68
HSPG2P98160 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 AC132938.2-201ENST00000579188 680 ntBASIC10.79□□□□□ -0.68
HSPG2P98160 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC10.79□□□□□ -0.68
HSPG2P98160 AL591163.1-201ENST00000641757 987 ntBASIC10.79□□□□□ -0.68
HSPG2P98160 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 SP100-208ENST00000427101 1922 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC10.79□□□□□ -0.68
HSPG2P98160 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms