Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
HMGA1P17096 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.25■□□□□ 0.51
HMGA1P17096 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 LINC00982-205ENST00000420957 435 ntBASIC18.25■□□□□ 0.51
HMGA1P17096 KRT18P2-201ENST00000447938 1258 ntBASIC18.25■□□□□ 0.51
HMGA1P17096 RNA5SP416-201ENST00000516838 111 ntBASIC18.25■□□□□ 0.51
HMGA1P17096 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.25■□□□□ 0.51
HMGA1P17096 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.25■□□□□ 0.51
HMGA1P17096 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGA1P17096 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGA1P17096 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGA1P17096 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.25■□□□□ 0.51
HMGA1P17096 AC064836.3-201ENST00000607928 673 ntBASIC18.25■□□□□ 0.51
HMGA1P17096 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.25■□□□□ 0.51
HMGA1P17096 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGA1P17096 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGA1P17096 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGA1P17096 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HMGA1P17096 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HMGA1P17096 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGA1P17096 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGA1P17096 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
HMGA1P17096 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
HMGA1P17096 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HMGA1P17096 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 AC108073.2-201ENST00000464002 357 ntBASIC18.24■□□□□ 0.51
HMGA1P17096 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.24■□□□□ 0.51
HMGA1P17096 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HMGA1P17096 AC135050.7-201ENST00000624508 2218 ntBASIC18.24■□□□□ 0.51
HMGA1P17096 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 GPR89P-201ENST00000407924 1495 ntBASIC18.24■□□□□ 0.51
HMGA1P17096 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGA1P17096 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGA1P17096 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGA1P17096 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGA1P17096 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGA1P17096 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HMGA1P17096 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGA1P17096 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.23■□□□□ 0.51
HMGA1P17096 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
HMGA1P17096 AC040169.1-201ENST00000565382 521 ntBASIC18.23■□□□□ 0.51
HMGA1P17096 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGA1P17096 AL805961.1-202ENST00000641562 540 ntBASIC18.23■□□□□ 0.51
HMGA1P17096 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HMGA1P17096 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HMGA1P17096 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGA1P17096 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGA1P17096 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
HMGA1P17096 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
HMGA1P17096 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.22■□□□□ 0.51
HMGA1P17096 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.22■□□□□ 0.51
HMGA1P17096 PTCHD3P3-201ENST00000403073 906 ntBASIC18.22■□□□□ 0.51
HMGA1P17096 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.22■□□□□ 0.51
HMGA1P17096 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.22■□□□□ 0.51
HMGA1P17096 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.22■□□□□ 0.51
HMGA1P17096 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.22■□□□□ 0.51
HMGA1P17096 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms