Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 AC092053.1-201ENST00000605787 1936 ntBASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 AC022188.1-201ENST00000620960 1664 ntBASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 AP003041.3-201ENST00000527151 707 ntBASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.55■□□□□ 0.24
TCRBV3S1A0A5B6 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 AL513523.2-202ENST00000427283 2040 ntBASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 AL023803.3-201ENST00000615559 522 ntBASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 AC007950.2-201ENST00000615045 2347 ntBASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.54■□□□□ 0.24
TCRBV3S1A0A5B6 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV3S1A0A5B6 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms