Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 AL031008.1-201ENST00000619963 541 ntBASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 NOC2LP1-202ENST00000452600 2235 ntBASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 AC018470.1-201ENST00000624790 3129 ntBASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 AC008608.2-201ENST00000606089 416 ntBASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 AC012317.2-201ENST00000623305 2251 ntBASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNX9Q9Y5X1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 AC103564.2-201ENST00000432853 1299 ntBASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 AC106795.1-205ENST00000512851 1056 ntBASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 AL121912.1-201ENST00000603683 238 ntBASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNX9Q9Y5X1 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 AP005117.1-201ENST00000584346 1413 ntBASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 MTDHP3-201ENST00000594186 672 ntBASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SNX9Q9Y5X1 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms