Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 TSSK5P-201ENST00000423978 907 ntBASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 SPCS2P4-201ENST00000436160 681 ntBASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 AC140658.5-201ENST00000438532 169 ntBASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 RN7SL589P-201ENST00000481268 310 ntBASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL17A1Q9UMD9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 LINC00982-205ENST00000420957 435 ntBASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 RPS2P32-201ENST00000439199 892 ntBASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 SPTLC1P1-201ENST00000447199 261 ntBASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL17A1Q9UMD9 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 AC097637.2-201ENST00000624096 1997 ntBASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 MIR1909-201ENST00000411312 80 ntBASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 AC069120.2-201ENST00000524091 540 ntBASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 NOP2-211ENST00000540228 668 ntTSL 2 BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 LINC01225-203ENST00000563550 1244 ntBASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 AL032819.2-201ENST00000624543 2162 ntBASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL17A1Q9UMD9 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 SLC25A24-204ENST00000569674 2357 ntBASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 KRT17P7-201ENST00000451704 1104 ntBASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 BSG-214ENST00000614867 960 ntTSL 3 BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 AC084121.4-201ENST00000641598 221 ntBASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 AF228730.8-201ENST00000642140 221 ntBASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL17A1Q9UMD9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC26.51■■□□□ 1.84
COL17A1Q9UMD9 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
COL17A1Q9UMD9 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 GNAS-203ENST00000306120 1878 ntBASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL17A1Q9UMD9 AC007952.6-201ENST00000573168 2673 ntBASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 AC003957.1-201ENST00000625108 2673 ntBASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 IGHV3-72-202ENST00000621503 303 ntBASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 PI4KAP1-204ENST00000612579 1703 ntBASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL17A1Q9UMD9 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms