Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GID4-202ENST00000376345 1391 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 S100A2-206ENST00000497140 697 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 AC023141.13-201ENST00000604991 943 ntBASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 AC012645.4-201ENST00000610691 1061 ntBASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CCDC88AQ3V6T2 AC132938.5-201ENST00000624980 1813 ntBASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 GGTLC5P-201ENST00000617623 998 ntBASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 AC025580.3-201ENST00000617932 1424 ntBASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 AC006116.8-202ENST00000587620 1550 ntBASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CCDC88AQ3V6T2 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 MIR4745-201ENST00000577608 62 ntBASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 AC135776.1-201ENST00000319817 2481 ntBASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 SPDYE11-202ENST00000450699 704 ntBASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 SPDYE9P-201ENST00000570642 692 ntBASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 RN7SL204P-201ENST00000582831 262 ntBASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 SPDYE10P-202ENST00000612005 668 ntBASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 SPDYE8P-202ENST00000612377 668 ntBASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC88AQ3V6T2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 OR7E47P-204ENST00000575924 449 ntBASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 AP001059.3-201ENST00000619053 235 ntBASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms