Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
HSPG2P98160 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC10.83□□□□□ -0.68
HSPG2P98160 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 AC140912.1-201ENST00000577171 1054 ntBASIC10.83□□□□□ -0.68
HSPG2P98160 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 PI4KAP1-204ENST00000612579 1703 ntBASIC10.83□□□□□ -0.68
HSPG2P98160 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC10.83□□□□□ -0.68
HSPG2P98160 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
HSPG2P98160 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC10.82□□□□□ -0.68
HSPG2P98160 AC004233.3-201ENST00000607794 1269 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 AC017083.2-201ENST00000608069 979 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 AC099568.2-201ENST00000609194 695 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 GGTLC5P-201ENST00000617623 998 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
HSPG2P98160 AL032819.2-201ENST00000624543 2162 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC10.82□□□□□ -0.68
HSPG2P98160 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
HSPG2P98160 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
HSPG2P98160 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
HSPG2P98160 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
HSPG2P98160 FAM86C2P-203ENST00000528684 1004 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 RARRES2P8-201ENST00000566335 367 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
HSPG2P98160 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC10.82□□□□□ -0.68
HSPG2P98160 COX11-210ENST00000639671 696 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 HARS-203ENST00000431330 1774 ntTSL 2 BASIC10.82□□□□□ -0.68
HSPG2P98160 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC10.82□□□□□ -0.68
HSPG2P98160 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC10.82□□□□□ -0.68
HSPG2P98160 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC10.82□□□□□ -0.68
HSPG2P98160 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC10.82□□□□□ -0.68
HSPG2P98160 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC10.82□□□□□ -0.68
HSPG2P98160 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC10.82□□□□□ -0.68
HSPG2P98160 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC10.82□□□□□ -0.68
HSPG2P98160 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC10.82□□□□□ -0.68
HSPG2P98160 AC008494.3-201ENST00000606615 944 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 MIR6080-201ENST00000617359 66 ntBASIC10.82□□□□□ -0.68
HSPG2P98160 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC10.82□□□□□ -0.68
HSPG2P98160 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
HSPG2P98160 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
HSPG2P98160 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
HSPG2P98160 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC10.81□□□□□ -0.68
HSPG2P98160 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC10.81□□□□□ -0.68
HSPG2P98160 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
HSPG2P98160 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC10.81□□□□□ -0.68
HSPG2P98160 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
HSPG2P98160 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms