Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.34■□□□□ 0.37
SHMT2P34897 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SHMT2P34897 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.34■□□□□ 0.37
SHMT2P34897 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.34■□□□□ 0.37
SHMT2P34897 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SHMT2P34897 IGHV3-47-201ENST00000425060 335 ntBASIC17.34■□□□□ 0.37
SHMT2P34897 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.34■□□□□ 0.37
SHMT2P34897 AC091607.1-201ENST00000490318 1060 ntBASIC17.34■□□□□ 0.37
SHMT2P34897 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.34■□□□□ 0.37
SHMT2P34897 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SHMT2P34897 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.34■□□□□ 0.37
SHMT2P34897 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.34■□□□□ 0.37
SHMT2P34897 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.34■□□□□ 0.37
SHMT2P34897 AC090340.1-201ENST00000620778 4980 ntBASIC17.34■□□□□ 0.37
SHMT2P34897 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.34■□□□□ 0.37
SHMT2P34897 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHMT2P34897 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHMT2P34897 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.33■□□□□ 0.37
SHMT2P34897 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SHMT2P34897 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
SHMT2P34897 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
SHMT2P34897 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.33■□□□□ 0.37
SHMT2P34897 SIRPAP1-201ENST00000448467 1770 ntBASIC17.33■□□□□ 0.37
SHMT2P34897 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHMT2P34897 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHMT2P34897 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.33■□□□□ 0.37
SHMT2P34897 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
SHMT2P34897 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHMT2P34897 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SHMT2P34897 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SHMT2P34897 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SHMT2P34897 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
SHMT2P34897 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.33■□□□□ 0.36
SHMT2P34897 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.33■□□□□ 0.36
SHMT2P34897 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.33■□□□□ 0.36
SHMT2P34897 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.33■□□□□ 0.36
SHMT2P34897 AC005336.2-201ENST00000593183 939 ntBASIC17.33■□□□□ 0.36
SHMT2P34897 AC099336.1-202ENST00000602961 463 ntBASIC17.33■□□□□ 0.36
SHMT2P34897 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.33■□□□□ 0.36
SHMT2P34897 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
SHMT2P34897 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SHMT2P34897 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
SHMT2P34897 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SHMT2P34897 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHMT2P34897 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SHMT2P34897 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.33■□□□□ 0.36
SHMT2P34897 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SHMT2P34897 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 HTR7P1-202ENST00000624664 4411 ntBASIC17.32■□□□□ 0.36
SHMT2P34897 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SHMT2P34897 AL645608.8-201ENST00000606034 2086 ntBASIC17.32■□□□□ 0.36
SHMT2P34897 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SHMT2P34897 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
SHMT2P34897 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
SHMT2P34897 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.32■□□□□ 0.36
SHMT2P34897 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.32■□□□□ 0.36
SHMT2P34897 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.32■□□□□ 0.36
SHMT2P34897 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SHMT2P34897 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHMT2P34897 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms