Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.42■□□□□ 0.7
COL6A1P12109 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 MIR661-201ENST00000384842 89 ntBASIC19.42■□□□□ 0.7
COL6A1P12109 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.42■□□□□ 0.7
COL6A1P12109 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.42■□□□□ 0.7
COL6A1P12109 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.42■□□□□ 0.7
COL6A1P12109 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.42■□□□□ 0.7
COL6A1P12109 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
COL6A1P12109 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
COL6A1P12109 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 AC092919.2-201ENST00000623631 1645 ntBASIC19.42■□□□□ 0.7
COL6A1P12109 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A1P12109 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A1P12109 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 AC018445.3-201ENST00000624177 1945 ntBASIC19.41■□□□□ 0.7
COL6A1P12109 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 AC006116.8-202ENST00000587620 1550 ntBASIC19.41■□□□□ 0.7
COL6A1P12109 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
COL6A1P12109 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A1P12109 AC236430.1-201ENST00000402231 743 ntBASIC19.41■□□□□ 0.7
COL6A1P12109 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A1P12109 AC002472.2-201ENST00000442739 958 ntBASIC19.41■□□□□ 0.7
COL6A1P12109 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A1P12109 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.41■□□□□ 0.7
COL6A1P12109 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A1P12109 RN7SL204P-201ENST00000582831 262 ntBASIC19.41■□□□□ 0.7
COL6A1P12109 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A1P12109 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A1P12109 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
COL6A1P12109 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
COL6A1P12109 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL6A1P12109 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.4■□□□□ 0.7
COL6A1P12109 AC055876.3-201ENST00000431496 288 ntBASIC19.4■□□□□ 0.7
COL6A1P12109 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 GAPDHP21-201ENST00000450301 1010 ntBASIC19.4■□□□□ 0.7
COL6A1P12109 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A1P12109 TERF1P3-201ENST00000505638 1227 ntBASIC19.4■□□□□ 0.7
COL6A1P12109 DUTP2-201ENST00000519164 463 ntBASIC19.4■□□□□ 0.7
COL6A1P12109 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A1P12109 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 AC051619.7-201ENST00000568314 623 ntBASIC19.4■□□□□ 0.7
COL6A1P12109 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.4■□□□□ 0.7
COL6A1P12109 AC138649.4-201ENST00000612222 287 ntBASIC19.4■□□□□ 0.7
COL6A1P12109 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A1P12109 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL6A1P12109 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A1P12109 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A1P12109 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.4■□□□□ 0.7
COL6A1P12109 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.4■□□□□ 0.7
COL6A1P12109 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A1P12109 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A1P12109 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A1P12109 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
COL6A1P12109 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A1P12109 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
COL6A1P12109 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL6A1P12109 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL6A1P12109 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL6A1P12109 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A1P12109 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A1P12109 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A1P12109 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A1P12109 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A1P12109 STK25P1-201ENST00000585406 838 ntBASIC19.39■□□□□ 0.69
COL6A1P12109 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A1P12109 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A1P12109 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms