Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC4P09017 AC006116.8-202ENST00000587620 1550 ntBASIC17.21■□□□□ 0.35
HOXC4P09017 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.21■□□□□ 0.35
HOXC4P09017 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 UNC93B6-202ENST00000528242 690 ntBASIC17.21■□□□□ 0.35
HOXC4P09017 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC4P09017 AC034105.1-201ENST00000563488 319 ntBASIC17.21■□□□□ 0.35
HOXC4P09017 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC4P09017 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HOXC4P09017 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.21■□□□□ 0.34
HOXC4P09017 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
HOXC4P09017 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.34
HOXC4P09017 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HOXC4P09017 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.2■□□□□ 0.34
HOXC4P09017 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
HOXC4P09017 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.2■□□□□ 0.34
HOXC4P09017 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
HOXC4P09017 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.2■□□□□ 0.34
HOXC4P09017 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HOXC4P09017 AL591424.1-201ENST00000442569 1213 ntBASIC17.2■□□□□ 0.34
HOXC4P09017 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HOXC4P09017 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.2■□□□□ 0.34
HOXC4P09017 AC104109.2-201ENST00000602919 1418 ntBASIC17.2■□□□□ 0.34
HOXC4P09017 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
HOXC4P09017 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.2■□□□□ 0.34
HOXC4P09017 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC4P09017 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
HOXC4P09017 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HOXC4P09017 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.19■□□□□ 0.34
HOXC4P09017 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HOXC4P09017 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
HOXC4P09017 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.19■□□□□ 0.34
HOXC4P09017 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.19■□□□□ 0.34
HOXC4P09017 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HOXC4P09017 ACTG1P4-201ENST00000425123 1122 ntBASIC17.19■□□□□ 0.34
HOXC4P09017 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HOXC4P09017 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.19■□□□□ 0.34
HOXC4P09017 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.19■□□□□ 0.34
HOXC4P09017 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.19■□□□□ 0.34
HOXC4P09017 AL353135.1-201ENST00000606729 504 ntBASIC17.19■□□□□ 0.34
HOXC4P09017 AC027601.4-201ENST00000611259 610 ntBASIC17.19■□□□□ 0.34
HOXC4P09017 FAM197Y3-203ENST00000618346 717 ntBASIC17.19■□□□□ 0.34
HOXC4P09017 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
HOXC4P09017 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HOXC4P09017 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HOXC4P09017 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HOXC4P09017 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.19■□□□□ 0.34
HOXC4P09017 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
HOXC4P09017 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.19■□□□□ 0.34
HOXC4P09017 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 GPR89P-201ENST00000407924 1495 ntBASIC17.18■□□□□ 0.34
HOXC4P09017 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.18■□□□□ 0.34
HOXC4P09017 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HOXC4P09017 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.18■□□□□ 0.34
HOXC4P09017 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HOXC4P09017 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms