Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 AC004870.1-201ENST00000315132 882 ntBASIC17.15■□□□□ 0.34
LDLRP01130 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.15■□□□□ 0.34
LDLRP01130 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.15■□□□□ 0.34
LDLRP01130 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.15■□□□□ 0.34
LDLRP01130 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.15■□□□□ 0.34
LDLRP01130 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.15■□□□□ 0.34
LDLRP01130 PRELID1P1-202ENST00000567272 903 ntBASIC17.15■□□□□ 0.34
LDLRP01130 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.15■□□□□ 0.34
LDLRP01130 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.15■□□□□ 0.34
LDLRP01130 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 RCC2P3-201ENST00000418112 1537 ntBASIC17.15■□□□□ 0.34
LDLRP01130 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.15■□□□□ 0.34
LDLRP01130 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LDLRP01130 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LDLRP01130 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
LDLRP01130 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.34
LDLRP01130 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
LDLRP01130 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
LDLRP01130 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 LINC01311-201ENST00000565162 1445 ntBASIC17.14■□□□□ 0.33
LDLRP01130 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.14■□□□□ 0.33
LDLRP01130 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LDLRP01130 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
LDLRP01130 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.14■□□□□ 0.33
LDLRP01130 KRT17P6-201ENST00000453795 1220 ntBASIC17.14■□□□□ 0.33
LDLRP01130 AP003041.3-201ENST00000527151 707 ntBASIC17.14■□□□□ 0.33
LDLRP01130 AC111152.3-201ENST00000569699 673 ntBASIC17.14■□□□□ 0.33
LDLRP01130 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.14■□□□□ 0.33
LDLRP01130 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
LDLRP01130 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 AC092119.3-201ENST00000612618 583 ntBASIC17.14■□□□□ 0.33
LDLRP01130 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
LDLRP01130 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 PHGDH-209ENST00000641074 1780 ntBASIC17.14■□□□□ 0.33
LDLRP01130 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.14■□□□□ 0.33
LDLRP01130 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 AC022211.2-201ENST00000585075 2527 ntBASIC17.14■□□□□ 0.33
LDLRP01130 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LDLRP01130 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.14■□□□□ 0.33
LDLRP01130 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LDLRP01130 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.14■□□□□ 0.33
LDLRP01130 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.14■□□□□ 0.33
LDLRP01130 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.14■□□□□ 0.33
LDLRP01130 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
LDLRP01130 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 KRT8P10-201ENST00000450021 1447 ntBASIC17.13■□□□□ 0.33
LDLRP01130 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LDLRP01130 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LDLRP01130 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 STARP1-201ENST00000397973 869 ntBASIC17.13■□□□□ 0.33
LDLRP01130 AL845331.1-201ENST00000424978 1190 ntBASIC17.13■□□□□ 0.33
LDLRP01130 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.13■□□□□ 0.33
LDLRP01130 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.13■□□□□ 0.33
LDLRP01130 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 AC006538.3-201ENST00000612495 578 ntBASIC17.13■□□□□ 0.33
LDLRP01130 AC023511.2-201ENST00000618803 211 ntBASIC17.13■□□□□ 0.33
LDLRP01130 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.13■□□□□ 0.33
LDLRP01130 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LDLRP01130 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LDLRP01130 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
LDLRP01130 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDLRP01130 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms