Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC14.28□□□□□ -0.12
HMGB3O15347 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
HMGB3O15347 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
HMGB3O15347 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 PCDHB19P-201ENST00000570871 2371 ntBASIC14.27□□□□□ -0.12
HMGB3O15347 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
HMGB3O15347 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.27□□□□□ -0.12
HMGB3O15347 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.27□□□□□ -0.12
HMGB3O15347 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC14.27□□□□□ -0.12
HMGB3O15347 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC14.27□□□□□ -0.12
HMGB3O15347 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGB3O15347 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.27□□□□□ -0.13
HMGB3O15347 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC14.27□□□□□ -0.13
HMGB3O15347 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC14.27□□□□□ -0.13
HMGB3O15347 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC14.27□□□□□ -0.13
HMGB3O15347 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 CFL2-205ENST00000555765 632 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC14.27□□□□□ -0.13
HMGB3O15347 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 AC060766.5-201ENST00000590539 871 ntBASIC14.27□□□□□ -0.13
HMGB3O15347 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC14.27□□□□□ -0.13
HMGB3O15347 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
HMGB3O15347 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC14.27□□□□□ -0.13
HMGB3O15347 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC14.27□□□□□ -0.13
HMGB3O15347 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC14.27□□□□□ -0.13
HMGB3O15347 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGB3O15347 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.27□□□□□ -0.13
HMGB3O15347 GPR161-208ENST00000537209 8256 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HMGB3O15347 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
HMGB3O15347 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 NBPF21P-201ENST00000425093 1451 ntBASIC14.26□□□□□ -0.13
HMGB3O15347 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HMGB3O15347 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.26□□□□□ -0.13
HMGB3O15347 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 METTL15-202ENST00000403099 795 ntTSL 5 BASIC14.26□□□□□ -0.13
HMGB3O15347 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGB3O15347 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC14.26□□□□□ -0.13
HMGB3O15347 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC14.26□□□□□ -0.13
HMGB3O15347 KLF2-202ENST00000592003 564 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGB3O15347 AC092118.2-201ENST00000613495 667 ntBASIC14.26□□□□□ -0.13
HMGB3O15347 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.26□□□□□ -0.13
HMGB3O15347 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
HMGB3O15347 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HMGB3O15347 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HMGB3O15347 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms