Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 AC008761.3-201ENST00000624803 892 ntBASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.33■■□□□ 1.01
ZC3H4Q9UPT8 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZC3H4Q9UPT8 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.33■■□□□ 1.01
ZC3H4Q9UPT8 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZC3H4Q9UPT8 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZC3H4Q9UPT8 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ZC3H4Q9UPT8 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
ZC3H4Q9UPT8 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ZC3H4Q9UPT8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
ZC3H4Q9UPT8 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ZC3H4Q9UPT8 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
ZC3H4Q9UPT8 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
ZC3H4Q9UPT8 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ZC3H4Q9UPT8 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 CXCL1P1-201ENST00000502804 216 ntBASIC21.32■■□□□ 1
ZC3H4Q9UPT8 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.32■■□□□ 1
ZC3H4Q9UPT8 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 PTCHD3P3-201ENST00000403073 906 ntBASIC21.31■■□□□ 1
ZC3H4Q9UPT8 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 AL158211.5-201ENST00000623583 2518 ntBASIC21.31■■□□□ 1
ZC3H4Q9UPT8 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ZC3H4Q9UPT8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZC3H4Q9UPT8 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZC3H4Q9UPT8 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZC3H4Q9UPT8 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZC3H4Q9UPT8 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.3■■□□□ 1
ZC3H4Q9UPT8 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.3■■□□□ 1
ZC3H4Q9UPT8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZC3H4Q9UPT8 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.3■■□□□ 1
ZC3H4Q9UPT8 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZC3H4Q9UPT8 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms