Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 AP003733.1-201ENST00000491725 852 ntBASIC17.02■□□□□ 0.32
VMP1Q96GC9 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 AC011498.5-201ENST00000592027 486 ntBASIC17.02■□□□□ 0.32
VMP1Q96GC9 AC069148.1-201ENST00000608741 768 ntBASIC17.02■□□□□ 0.32
VMP1Q96GC9 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.02■□□□□ 0.31
VMP1Q96GC9 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VMP1Q96GC9 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VMP1Q96GC9 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.02■□□□□ 0.31
VMP1Q96GC9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VMP1Q96GC9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 SDHAP2-201ENST00000455183 2001 ntBASIC17.01■□□□□ 0.31
VMP1Q96GC9 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 AC080080.1-201ENST00000625121 2420 ntBASIC17.01■□□□□ 0.31
VMP1Q96GC9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
VMP1Q96GC9 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VMP1Q96GC9 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17■□□□□ 0.31
VMP1Q96GC9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17■□□□□ 0.31
VMP1Q96GC9 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17■□□□□ 0.31
VMP1Q96GC9 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17■□□□□ 0.31
VMP1Q96GC9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17■□□□□ 0.31
VMP1Q96GC9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17■□□□□ 0.31
VMP1Q96GC9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17■□□□□ 0.31
VMP1Q96GC9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17■□□□□ 0.31
VMP1Q96GC9 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17■□□□□ 0.31
VMP1Q96GC9 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VMP1Q96GC9 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17■□□□□ 0.31
VMP1Q96GC9 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17■□□□□ 0.31
VMP1Q96GC9 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VMP1Q96GC9 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VMP1Q96GC9 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17■□□□□ 0.31
VMP1Q96GC9 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17■□□□□ 0.31
VMP1Q96GC9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17■□□□□ 0.31
VMP1Q96GC9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VMP1Q96GC9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms